fMRI analysis training workshop

2 Dec 2008 - 00:15
5 Dec 2008 - 13:15
Location: 
UniMail

On December 2nd to 5th, the NCCR Affective Sciences, the CISA, and the Centre de Neuroscience will organize a training workshop on functional MRI analysis. Seven fMRI experts will train the participants to analyze fMRI data with the SPM5 software in a series of practical courses. These courses are designed for beginners who plan to use fMRI in future experiments. Good knowledge of neuroscience and psychology are required (e.g., Master level). These courses will cover all usual analysis steps in fMRI from acquisition and pre-processing to the first and second levels of analysis including beta extraction, ROIs and PPI analyses as well as a some discussion on interpretation issues. A theoretical introduction to MR physics and the neurophysiological basis of fMRI signals will be given at the beginning of the course. The course will be given in English or in French with English-written visual support, and will take place at UniMail.

Members of the doctoral school attending this course will validate 2 ECTS.

 

Detailed information : Program in PDF

 

PPT files:

How are we measuring? MR physics, sequences and artifacts, Sebastian Rieger

The General linear model, updated file, Dimitri Van De Ville

 Introduction to Matlab, Karim N'Diaye

Preprocessing and normalization, Karim N'Diaye

Design Efficiency, Frédéric Grouiller

Hemodynamic response function, Frédéric Grouiller 

First level Analysis, Virginie Sterpenich 

Second level Analysis, Virginie Sterpenich

Functional connectivity, Virginie Sterpenich

Localizers and Atlases, Karim N'Diaye

Pratical Session, Karim N'Diaye, Yann Cojan, Virginie Sterpenich, Dimitri Van De Ville, Frédéric Grouiller. 

 

 The practical session made use of the fMRI dataset provided by the SPM team at :

http://www.fil.ion.ucl.ac.uk/spm/data/face_rep/face_rep_SPM5.html

All instructions on how to analyze the single-subject and group data are detailed in the SPM manual (pp. 230 et sqq):

http://www.fil.ion.ucl.ac.uk/spm/doc/manual.pdf

Have fun with your future fMRI analysis! 

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